YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56420657, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNEKRMERL LGYSLVAPAM LLILAIAIWP VIQSFYYSLF DYRLNDPTKS SIHWSYSLDL  60
   61 EGYLQNYPFL KSALKQEMAA ADGQTKQTLA QIEQKLAKLD AAIRSNDQVA EQYDKVNEVL 120
  121 DNFETPSDEL KIAELDKQTA ERLTDTVHDV VKTLKEMKKA GELQQADKVV GLAEGLEGVV 180
  181 IEPNFVGLKH YKDSFSDMRL WKALWNTTFF TVVSVAIELV LGLGIALLIN KAFFGRGLVR 240
  241 ATILIPWAIP TAVSALMWKF LYDGQNGIVA KYFETVGLVD RMGDLLTTEA GAMFAVIFAD 300
  301 VWKTTPYMAL LLLAGLQTIP SSLYEAASID GATKWQQFTK ITLPLLKSSI LVALLFRTLD 360
  361 AFRVFDLIYV LTGGGPANST ETISILAYKV MFSQTNFGAG SALAVIVFLC VAVISMIYIR 420
  421 WLGKDLLSDG SSVKR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	32	0.92
Non-Cytoplasmic	33	207	0.96
Transmembrane Helix	208	229	0.93
Cytoplasmic	230	237	0.80
Transmembrane Helix	238	261	0.84
Non-Cytoplasmic	262	303	0.74
Transmembrane Helix	304	324	0.63
Cytoplasmic	325	342	0.69
Transmembrane Helix	343	361	0.66
Non-Cytoplasmic	362	398	0.65
Transmembrane Helix	399	422	0.89
Cytoplasmic	423	435	0.89