YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56420159, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.21
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFQWGMSRQ KKRMDVKQEG PDHSGEASDV PQEPLSAELA VNIDIIRQKT GESNDVVIRR  60
   61 FALGQEWQIK AAIIFVDGLV DEKNVYEFVL TPLLQASFPL ALEEKERFQW IEKKLAAVGG 120
  121 VKHISDWRKL FFELFSGATV MLIDGVPFAI SASTKGGEYR SIEEPQTQIA VRGPREGFTE 180
  181 SLRTNTAMIR RRIRNPNLWL ETMQIGAVTQ TDVAIMYIKG IANDEIVKEV RARLRRIDID 240
  241 GVLESGYIEQ LIEDQTFTTF PTTYHTERPD IVAANLLEGR VAVFVEGTPF VLVAPALFIQ 300
  301 FFQAVEDYYA RFDISTALRF LRVLIFFISL VAPAIYIAAT TFHQEMIPTQ LVIAIAAQRE 360
  361 AVPFPGFVEA LVMEVTFEIL REAGVRLPRA VGQAVSIVGA LVIGQAAVEA GFVSSAMVIV 420
  421 VSITAIASFA TPSFAIAISA RLIRFGLMFL AAMFGFYGIM MGILVMTIHL CSLRSFGVPY 480
  481 MSPLAPFIPT NMGDTLFRLP TWMFRERPRL INQKNIVRQS GDQKPEPPAP SRQEKGGGS

Type	Start	End	Confidence
Cytoplasmic	1	133	0.62
Transmembrane Helix	134	148	0.21
Non-Cytoplasmic	149	281	0.50
Transmembrane Helix	282	302	0.61
Cytoplasmic	303	319	0.62
Transmembrane Helix	320	340	0.93
Non-Cytoplasmic	341	360	0.52
Transmembrane Helix	361	377	0.48
Cytoplasmic	378	389	0.68
Transmembrane Helix	390	408	0.84
Non-Cytoplasmic	409	415	0.68
Transmembrane Helix	416	438	0.89
Cytoplasmic	439	446	0.77
Transmembrane Helix	447	470	0.89
Non-Cytoplasmic	471	479	0.78
Transmembrane Helix	480	499	0.71
Cytoplasmic	500	539	0.77