YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56379670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPNKITVA RIMLIPFFLI VMLVPFGWGS IQIGGTELPV AHLAGALIFI IASATDWIDG  60
   61 YYARKYGLVT NLGKFLDPLA DKLLVSAALI VLVELGAVPA WMVIVIISRE FAVTGLRLVL 120
  121 AGEGEVVAAN MLGKIKTWTQ IVAISALLLH NFPFSLISFP FAELALWVAV IFTIWSGWDY 180
  181 FAKNRHAFSH SK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	31	0.88
Non-Cytoplasmic	32	39	0.76
Transmembrane Helix	40	62	0.86
Cytoplasmic	63	82	0.83
Transmembrane Helix	83	105	0.88
Non-Cytoplasmic	106	155	0.60
Transmembrane Helix	156	182	0.78
Cytoplasmic	183	192	0.88