YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56419704, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKGKHILLC VTGGVAAYKA AVLTSQLTQR GAEVKVIMTE GACQFITPLT FQALSRQEVY  60
   61 VDTFAENNPA VIAHIDLADW ADLVLVAPAT ANTMAKLAAG IADNMVTTTI LATKAPVWIA 120
  121 PAMNVHMYEH PAVQANIERL CQFGYRFIEP SEGYLACGYI GKGRLEEPEN IIAHIERFFA 180
  181 GDPPLFRGKR VLVTAGPTRE RLDPVRYFSN YSSGKMGYAI AEAAARFGAS VTLVSGPTAL 240
  241 SSPDGVETVA VESAEEMYEA VMARFAETDI VIKAAAVADY RPKYVAASKI KKQPGDYVVE 300
  301 MERTVDILKA LGERKTGQIL VGFAAETDNL EQYALKKLEE KRLDMVVANN VTEEGAGFAG 360
  361 DTNIVTIFRR DGVVRPLPLM TKREAAEEIL KEIHAYIEAI R

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	401	0.99