YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLS_GEOKA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNTSRVAIL VVIVGALLAL TNGFWEGKLL GLFSVLMSCS VIFIALVISL ENRKPAQTIA  60
   61 WLAVLGSFPI VGFLFYLLFG RNYWQQRRYK KKADFDEAVL LKFQEPSPIA VERLPMAPHQ 120
  121 RPLLRLAYRI GQHPVSLASQ TAVLTNGEET FSSIFAELEK AEHHIHLEYY IVRHDEIGQQ 180
  181 LKRVLMEKAR QGVRVRFLYD AVGSWKLSNA YIEELRAAGV EMIPFSPVRL PFLSNQINFR 240
  241 NHRKIIVIDG GVGFVGGLNI GDEYLGKNKY FGFWRDTHLL IRGEAVRTLQ LIFLQDWYYM 300
  301 TGERLLTPDY LSPPLIVEEG QGGVQLIAGG PDQKWEVIKQ LYFAMITSAK RSIWVASPYF 360
  361 VPDEDILTAL KVAALSGIDV RLLAPKRPDK KIVFYASRSY FPELLEAGVK IYEYEKGFLH 420
  421 SKVIVVDGEL ASIGTANMDM RSFHLNFEVN AFLYYTDSIH KLVRDFLEDF RHASMIDYEQ 480
  481 FQQRPFRVRI AESVSRLLSP LL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	25	0.93
Non-Cytoplasmic	26	29	0.84
Transmembrane Helix	30	50	0.94
Cytoplasmic	51	57	0.92
Transmembrane Helix	58	79	0.94
Non-Cytoplasmic	80	502	0.98