YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56419123, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.97
Transmembrane Helix	15	37	0.91
Non-Cytoplasmic	38	43	0.86
Transmembrane Helix	44	66	0.88
Cytoplasmic	67	82	0.94
Transmembrane Helix	83	106	0.90
Non-Cytoplasmic	107	111	0.94
Transmembrane Helix	112	134	0.90
Cytoplasmic	135	144	0.82
Transmembrane Helix	145	168	0.83
Non-Cytoplasmic	169	188	0.89
Transmembrane Helix	189	209	0.94
Cytoplasmic	210	219	0.99
Transmembrane Helix	220	243	0.84
Non-Cytoplasmic	244	257	0.77
Transmembrane Helix	258	277	0.94
Cytoplasmic	278	288	0.79
Transmembrane Helix	289	310	0.87
Non-Cytoplasmic	311	316	0.64
Transmembrane Helix	317	340	0.88
Cytoplasmic	341	353	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTGKKRLS FLDRYLTLWI FLAMAAGIGL GFVFPGFVDG MNSLQVGTTS IPIAIGLILM  60
   61 MYPPLAKVRY EEIGRVFKDV KVLVLSLVQN WIIGPILMFL LAIIFLPDKP EYMVGLIMIG 120
  121 LARCIAMVIV WNDLAKGDRE YAAGLVAFNS VFQMLFYSVY AYVFVTIIPE WLGLEGAVVN 180
  181 ITMMEVAKSV FIYLGIPFLG GMLTRFLLVK AKGRQWYEKV FIPKVSPITL ISLLFTIIVM 240
  241 FSLKGDVIVS LPLDVVRVAI PLLIYFVLMF FVSFFLGRKF GARYPVTTTL AFTAGSNNFE 300
  301 LAIAVAVGVF GIHSGAAFAA VIGPLVEVPV MIALVNVALW FQRKYFKTES VSY