YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56378632, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.85
Transmembrane Helix	18	39	0.85
Non-Cytoplasmic	40	54	0.81
Transmembrane Helix	55	76	0.88
Cytoplasmic	77	80	0.75
Transmembrane Helix	81	103	0.83
Non-Cytoplasmic	104	107	0.74
Transmembrane Helix	108	127	0.94
Cytoplasmic	128	138	0.89
Transmembrane Helix	139	161	0.88
Non-Cytoplasmic	162	177	0.79
Transmembrane Helix	178	195	0.91
Cytoplasmic	196	201	0.78
Transmembrane Helix	202	221	0.93
Non-Cytoplasmic	222	251	0.86
Transmembrane Helix	252	274	0.86
Cytoplasmic	275	290	0.82
Transmembrane Helix	291	313	0.86
Non-Cytoplasmic	314	320	0.80
Transmembrane Helix	321	343	0.84
Cytoplasmic	344	348	0.61
Transmembrane Helix	349	371	0.85
Non-Cytoplasmic	372	387	0.73
Transmembrane Helix	388	411	0.86
Cytoplasmic	412	420	0.76
Transmembrane Helix	421	439	0.95
Non-Cytoplasmic	440	441	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKYFQFDEL GTNYRTEIIA GLTTFLSMAY ILFVNPFTLS LGAVKDFPDE LRIDQGAVFV  60
   61 ATALAAAYGS ILMGVLARYP IALAPGMGLN AFFAFTVVLH MGIPWQTALA GVFVSGIIFT 120
  121 ILSLTGIREK IIDAIPVELK YAVSAGIGLF ITFIGLQNAG IIVDNKATLV GLSSLKDGNT 180
  181 LLAIFGLFIT VVLMVRKVNG GVFYGMVITA IVGMIFGLIK VPHQIVGAIP DISPTFGVAI 240
  241 KHLPDIFSWK MLGVVLTFFI VDFFDATGTL LAVANQAGLL KNNKLPRAGK ALLVDATAVM 300
  301 VGAVFGTSTT TSYIESSAGV AAGGRSGFSA VVTGILFLLA LFFSPLLSVI TAPVTAPALI 360
  361 IVGVLMASSI GEIDWKKFEV AVPAFFTLIT MPLSYSIATG IAVGFIFYPI TMILKGRGKD 420
  421 VHPLLYVLFV VFICYFVFLR E