YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56418589, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVSIQLYTM LAMIGMGGWL GLAWDTYSRM LKRHERAHWL VFVNDVLFWA VQALIVFYVL  60
   61 LFVNEGELRF YLFLALLCGY AAYQSLLRSF YVRVLEWFIG LAVRLGQTLV QLFRLMVMRP 120
  121 LILLGQMALA LLLFAWRLLL WIVRFVLLAV WKMIRLLLAP LRWTGIMIWR RVPPQRRAGV 180
  181 EKFFRHLKGF AGQIKNTKEK ISMWFAKRRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.85
Transmembrane Helix	7	27	0.92
Cytoplasmic	28	38	0.89
Transmembrane Helix	39	62	0.90
Non-Cytoplasmic	63	69	0.81
Transmembrane Helix	70	91	0.85
Cytoplasmic	92	114	0.68
Transmembrane Helix	115	140	0.75
Non-Cytoplasmic	141	141	0.39
Transmembrane Helix	142	166	0.66
Cytoplasmic	167	210	0.91