YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71909480, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRILRLLKIA SVASRFGLDE MVLEHEPSGR LVRIANALQF WRDLSTPRAV RLRLALESLG  60
   61 PIFVKFGQVL STRRDLMPPD IADELARLQD RVPPFDSALA LAEIEKAYGR PASEVFAEFD 120
  121 ATPIASASIA QVHFAKLREE DGGHEVAVKI LRPNMLSVIE HDLALMDNLA MLLEKLWSDG 180
  181 KRLKPREVVA EFAKYLRDEL DLMREAANAS QLRRNFTDSQ LLIVPEVHWD FCTSTVMVME 240
  241 RMKGTPISQI DKLRADGIDL SKLSAAGVEI FFTQVFRDGF FHADMHPGNI FVAPDGRYIA 300
  301 LDFGIVGTLT DSDKNYLAQN FLAFFRRDYK RVAEAHIESG WAPKDTRVDE FEAAIRAVCE 360
  361 PIFDRPLKDI SFGKILLRLF QTSRRFNVEI QPQLVMLQKT LLNIEGLGRQ LDPELDLWKT 420
  421 AKPFLERWMS EQIGWRGLIK TFKQEAPYLA RTIPQLPRLV HQALSNPTKA DLQPQLAQLI 480
  481 AAQHQQNRWL AIIALLLALL VGALFA

Type	Start	End	Confidence
Non-Cytoplasmic	1	487	0.86
Transmembrane Helix	488	505	0.82
Cytoplasmic	506	506	0.71