YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56477614, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	40	0.89
Non-Cytoplasmic	41	72	0.75
Transmembrane Helix	73	95	0.75
Cytoplasmic	96	116	0.91
Transmembrane Helix	117	137	0.92
Non-Cytoplasmic	138	148	0.84
Transmembrane Helix	149	169	0.96
Cytoplasmic	170	177	0.88
Transmembrane Helix	178	201	0.88
Non-Cytoplasmic	202	209	0.82
Transmembrane Helix	210	232	0.92
Cytoplasmic	233	266	0.95
Transmembrane Helix	267	289	0.88
Non-Cytoplasmic	290	311	0.91
Transmembrane Helix	312	333	0.92
Cytoplasmic	334	367	0.93
Transmembrane Helix	368	387	0.94
Non-Cytoplasmic	388	393	0.79
Transmembrane Helix	394	413	0.90
Cytoplasmic	414	441	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPAATLGA SGRFGDLKRR VLFLLGALLV YRIGGHIPVP GIDPARLSEL FQSQAGGILG  60
   61 VFNLFSGGAL SRFTIFALGI MPYISASIIM QLMTVAVPQL EALKKEGEAG RRKITQYTRY 120
  121 GTVALSLAQS LGIAIALESQ PGLVLDPGLM FRFVTVATLV TGTMFLMWLG EQITERGIGN 180
  181 GISLIIFAGI AAGLPSAIGG LFELVRTGAM HPFTALLICV LVVLVTGFVV FVERGQRKIL 240
  241 VNYAKRQVGN KIYGGQSSHL PLKLNMAGVI PPIFASSIIL FPATLGQWFG ASEGMTWLRD 300
  301 ISSTLAPGQP IYVMLYAAAI MFFCFFYTAL VFNARETADN LKKSGAFVPG IRPGDQTSRY 360
  361 IDKILTRLTL VGAVYITLVC LLPEFLILRW NVPFYFGGTS LLIIVVVTMD FMTQVQAYVM 420
  421 SHQYESLLKK ANFKGAGLPT R