YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_AROAE
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQRRLVLFL VFSLSLVMLW NAWLKQSQPA PTAVTATAGV EGAGVPTPTT GVAPGATTAV  60
   61 PGVPGAATAS TAPRMVVRTD LMVAEVSAQG GDIVRLELAQ HKATADKTKN FVLFDDGTIH 120
  121 LYAAQSGLIG EDLPTHKTTF ALPQGEQVLK EGEDRLVVRL EAPEQDGVKV TKVMTFHRGN 180
  181 YLVDVAYEIV NSSERTLSPH AYYQLTRDGK PAESVEAFGV TTFTGPAFYT DAEKFQKVQF 240
  241 EEIAEGKAKF VKKASDGWIA MVQHYFVSAW LPQGGTEREF FAQKVGNDLY SAGVIVPVAA 300
  301 IQPGQSGRVE ASLYAGPQEQ DKLEDIAPGL DLVVDYGWLT VIAAPLFWVL SWIHGVVGNW 360
  361 GWAIIIVTIL IKLMFFPLSA ASYKSMAKMR VLGPRMQRLK ELYGNDKAKM QQEMMEMYRK 420
  421 EKINPLGGCL PILVQIPVFI SLYWVLLGSV EMRQAPWLGW IQDLSAKDPY FILPVIMGVS 480
  481 MLIQMKLNPT PPDPIQAKVM MAMPVIFTFM FLWFPSGLVL YWVVNNILSI AQQWQITRMI 540
  541 ESEKSGAKPA

Type	Start	End	Confidence
Cytoplasmic	1	5	0.51
Transmembrane Helix	6	24	0.55
Non-Cytoplasmic	25	51	0.84
Transmembrane Helix	52	72	0.45
Cytoplasmic	73	331	0.60
Transmembrane Helix	332	354	0.69
Non-Cytoplasmic	355	359	0.67
Transmembrane Helix	360	381	0.88
Cytoplasmic	382	423	0.94
Transmembrane Helix	424	447	0.90
Non-Cytoplasmic	448	468	0.88
Transmembrane Helix	469	487	0.88
Cytoplasmic	488	500	0.80
Transmembrane Helix	501	524	0.86
Non-Cytoplasmic	525	550	0.88