YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56312925, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSCCPTPA AGRSRGQEIG RGAPRVRESD RGDFDMMLSR LTLGVAILAA VVLFLSGSGT  60
   61 RFGLWPFPTG FMLLKWAAYF GLAAAAIALV GLIVPKLRAG QGRSFAAALV LGLAVAAVPV 120
  121 YWMQAAGQVP RIHDISTDLD NPPAFDAVLA QRGDASNPPE HGGPAVAEAQ RRAYPDIRPL 180
  181 VLPLPPADAF AHALRGARAM GWEIVAQDAA AGRIEATATT LWFGFRDDVV ARVAPTEGGS 240
  241 RIDVRSASRV GVSDVGANAK RIRAYLARLA NSAD

Type	Start	End	Confidence
Cytoplasmic	1	40	0.93
Transmembrane Helix	41	60	0.90
Non-Cytoplasmic	61	75	0.77
Transmembrane Helix	76	94	0.97
Cytoplasmic	95	104	0.78
Transmembrane Helix	105	123	0.97
Non-Cytoplasmic	124	274	0.96