YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57641944, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHHHHGELK GRMLFSFALN IVITLAEVIG GILSGSLALL SDSLHNFSDS MSILASYLAI  60
   61 KIGEREKNEK YTFGYKRAEI LVAFVNSAVL VGVALFLLVE AYKRFKNPEP IDGPLMLGVA 120
  121 LIGLFANLIS VLLLHEHAHE SMNVRSAYLH LLSDTLSSVA VVIGGIAIIR WDVLWIDPLV 180
  181 TVLISVYILR EGYEILKESV EVLMEAAPDL DLDEIKREIE SIPGIRNAHH FHVWRIGEKE 240
  241 IHFECHVEVN DMPISEAQRL IDEIEERLKR FGITHVTVQL EAGRCEDKNT ICGEKGD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	38	0.85
Non-Cytoplasmic	39	79	0.55
Transmembrane Helix	80	102	0.88
Cytoplasmic	103	112	0.49
Transmembrane Helix	113	135	0.90
Non-Cytoplasmic	136	146	0.48
Transmembrane Helix	147	171	0.79
Cytoplasmic	172	297	0.70