YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57641844, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISVVIPTY NERENLPELV ERLSRALQGY EYEIVIVDDD SPDKTWGLAE ELARKYPIKV  60
   61 IRRTKEKGLS SAVIRGFKEA SGDVFVVMDA DLQHPPEKVP ELIEAIKRGA DIAIASRYVP 120
  121 GGAVKNWYWY RKLISKGAIM IGRVALPRIR NVKDPVSGFF ALRREVVEGV ELNPVGFKIL 180
  181 MEILVKGHYN NVREVPFTFG LRKAGESKLG SRTIVNYLRH IYRLMRWEGE IDRLVKFSLV 240
  241 GLSGVLVNEG FLWAFVEFFG WDKVFSNILA TELAILNNFT WNDIWTFRDL KNKPLLKRLV 300
  301 SFHVAALSGA LVQWAIYVIL MAVGVHYLLA NLIGIVVSFI VRFAVNRHVT WG

Type	Start	End	Confidence
Cytoplasmic	1	233	0.98
Transmembrane Helix	234	256	0.88
Non-Cytoplasmic	257	263	0.80
Transmembrane Helix	264	285	0.80
Cytoplasmic	286	298	0.86
Transmembrane Helix	299	317	0.95
Non-Cytoplasmic	318	324	0.66
Transmembrane Helix	325	345	0.92
Cytoplasmic	346	352	0.89