YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57640094, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.99
Transmembrane Helix	29	51	0.89
Non-Cytoplasmic	52	82	0.89
Transmembrane Helix	83	105	0.89
Cytoplasmic	106	116	0.85
Transmembrane Helix	117	139	0.88
Non-Cytoplasmic	140	154	0.80
Transmembrane Helix	155	177	0.81
Cytoplasmic	178	209	0.91
Transmembrane Helix	210	236	0.81
Non-Cytoplasmic	237	259	0.90
Transmembrane Helix	260	280	0.93
Cytoplasmic	281	312	0.88
Transmembrane Helix	313	334	0.90
Non-Cytoplasmic	335	371	0.94
Transmembrane Helix	372	393	0.93
Cytoplasmic	394	401	0.92
Transmembrane Helix	402	424	0.91
Non-Cytoplasmic	425	432	0.80
Transmembrane Helix	433	452	0.95
Cytoplasmic	453	485	0.91
Transmembrane Helix	486	506	0.88
Non-Cytoplasmic	507	534	0.72
Transmembrane Helix	535	556	0.92
Cytoplasmic	557	564	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPPDLNNL AQSTLINPKN RVIGMRPKAL AVILPPLAFL VFFFYAPILS ILSLGVWENG  60
   61 PTLEYLRAVL SNEYHRNVIL FTISQALAST VLTVLIGLPG AYIFANYDFP GKRLIKAVLT 120
  121 VPFVMPGIMV ALGFVILFGK GGIIAGLIGR DPGIIYSWKA ILLAHSFYNF PIVVRMVSAL 180
  181 WQRVNPHYEE MAEVLGAKGF TLFRKVTLPL ISPAIFASAM LTFVFCFLSF SVPLILGGYQ 240
  241 YVTIEVDIFS TIVTLLDFRT GAALAIIQLS LSVVFMYLYL KALEAYSKRE EQRIMRKPKE 300
  301 LTIRSILSPK GLGIVLYSIF VVVFILAPLG AVVYDSLRFN GTWSLEWYRR IFSTEYNPMF 360
  361 GTSTLGAIRN SLLFGFATVF LSTLVGLPIA YFLNRWKFKG KVLLDALAML PLASSPITIG 420
  421 FAYVKFFSTT PLYYTIWIIV IAHTVIAYPF VLRSVSTALK KIKPNLREAA LSLGAGEWKA 480
  481 FLRVELPLAA GGLVVGAIFA FAMSIAELGA TYMLATPEYT TMTIAIYKFL GARQFGSASA 540
  541 LSVLLMAVSA LGFIIIERTG EEVW