YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78706792, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.73
Transmembrane Helix	15	42	0.77
Non-Cytoplasmic	43	55	0.68
Transmembrane Helix	56	80	0.83
Cytoplasmic	81	98	0.82
Transmembrane Helix	99	121	0.85
Non-Cytoplasmic	122	167	0.85
Transmembrane Helix	168	189	0.91
Cytoplasmic	190	209	0.81
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	277	0.87
Transmembrane Helix	278	294	0.93
Cytoplasmic	295	304	0.73
Transmembrane Helix	305	327	0.83
Non-Cytoplasmic	328	361	0.82
Transmembrane Helix	362	382	0.84
Cytoplasmic	383	399	0.78
Transmembrane Helix	400	423	0.89
Non-Cytoplasmic	424	443	0.68
Transmembrane Helix	444	467	0.75
Cytoplasmic	468	480	0.72
Transmembrane Helix	481	505	0.87
Non-Cytoplasmic	506	517	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSWRIIWQA FQCMYLVANM ALFWITEAIP LYLTALFPVV FLPLFGILTS EKVCSFYFSD  60
   61 TVVMFIGGLL IALAIEYSNL HQRIALNTIL IVGCSPRRLH FGLVMVTCFI SLWISNSAAT 120
  121 AMMCPIVKAV LNEMETQNIF AIYKTQEEEP VEEGDPPHPS TISMAFYFGI AYSSSIGGCG 180
  181 TLIGTGTNLT YKGLYDTRFP NSDEKIDFPI FMAYSVPFVV LVLIFLTYFS LQVTHMGLFR 240
  241 PNSKIGQEVK KGAESQDVVK DVIKQRKAEL GPMSCHEIQV GLLFVLMIFL LFTRKPGFFP 300
  301 GWADFLNAKA IGSGPPVFFA TILLFALPTQ YTFFKYCCGK APFPGQTLDA CLSWVYCQKY 360
  361 TPFGLAFLLG GFALAEGSRV SGMAKMLGES LAFAGEMHSV LVISMCIIIS LFCTAFASNV 420
  421 AICNILIPIF SEMALAIEVH PMKLTFPAAL ACSLAFHLPV STPPNAIISG FTGLKTKYMA 480
  481 IAGILPTCWA FLCLLFTGTV WTMLIYPGTT EFPSWAI