YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8795-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSRAVKF IFAIWIAALL LALPQAIQFS VVMQGMGTSC TMKNDFFAHV FAVSGFLFFG  60
   61 GPMTAICVLY VLIGVKLKRS RLLQALPRRC YDVNRGISAQ TRVIRMLVAV AVAFFICWAP 120
  121 FHAQRLMAVY GSTSGIESQW FNDVFSILDY TSGVLYFLST CINPLLYNIM SHKFREAFKV 180
  181 TLARHFGLGG KNQGRGLPHT YSALRRNQTG SLRLHTTDSV RTTMTSMATT TTGLNGSANG 240
  241 SGNGTTTGQS VRLNRVSLDS VQMQGQNRSR QDLFDNPRRM LQTQISQLSS VGDAHSLLEE 300
  301 DLQFPGEPLQ RQPTMCSIDE LTDDLAISRS RLKLTRITRP PGGVTGGVAG GSTTGAAGSG 360
  361 GVSGDESSGK VRKAKVKVLK SSSPFKGLRT KFNWRARRKG SHKPHEKGAT VNGGDTEERA 420
  421 AF

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	29	0.93
Non-Cytoplasmic	30	50	0.87
Transmembrane Helix	51	73	0.93
Cytoplasmic	74	102	0.95
Transmembrane Helix	103	123	0.93
Non-Cytoplasmic	124	146	0.93
Transmembrane Helix	147	169	0.84
Cytoplasmic	170	422	0.84