YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr47a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPFIAPLVM NNQTINTGLI GLTQRPIKQA VKQIQLAVLR MAFTSSQLCS LLTKFTALNG  60
   61 LNTYYFDTKT NAFRVSSKLK IYCAIHHALC VLALAHMSYS TASNLRVSVT VLTIGGTMAC 120
  121 CVKSCWEKAQ GIRNLARGLV TMEQKYFAGR PSGLLLKCRY YIKITFGSIT LLRIHLIQPI 180
  181 YMRRLLPSQF YLNVGAYWLL YNMLLAAVLG FYFLLWEMCR IQKLINDQMT LILARSGQRN 240
  241 RLKKMQHCLR LYSKLLLLCD QFNSQLGHVA IWVLACKSWC QITFGYEIFQ MVAAPKSIDL 300
  301 TMSMRVFVIF TYIFDAMNLF LGTDISELFS TFRADSQRIL RETSRLDRLL SMFALKLALH 360
  361 PKRVVLLNVF TFDRKLTLTL LAKSTLYTIC CLQNDYNKLK A

Type	Start	End	Confidence
Cytoplasmic	1	78	0.92
Transmembrane Helix	79	99	0.76
Non-Cytoplasmic	100	106	0.66
Transmembrane Helix	107	126	0.82
Cytoplasmic	127	159	0.93
Transmembrane Helix	160	177	0.92
Non-Cytoplasmic	178	194	0.85
Transmembrane Helix	195	216	0.92
Cytoplasmic	217	305	0.88
Transmembrane Helix	306	323	0.67
Non-Cytoplasmic	324	401	0.60