YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Vkor-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQAYSTASR LRGICVCGLA ISVYSLYVKM KLKEDENYRP MCDVNDNISC SLVFKSGYGD  60
   61 GFGLGNITQV NAPNGAIGCA FYILYFLSSF FNHRWLCLVQ LIVCTLTLLL CVYLGFLLIL 120
  121 VFYDFCLVCV TIYFIHTWLF QEVLRRYRRL YM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	28	0.81
Non-Cytoplasmic	29	66	0.86
Transmembrane Helix	67	86	0.84
Cytoplasmic	87	94	0.76
Transmembrane Helix	95	116	0.90
Non-Cytoplasmic	117	120	0.69
Transmembrane Helix	121	140	0.94
Cytoplasmic	141	152	0.92