YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MARC1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKEAFATI FDQNRKVALY AAGTTVAVLG LGLVFKYMRR EEKLTRVGVV TKLLVHPLKS  60
   61 GKAVSVEAAE CLRMGLKYGE LRDRHWLVIT EDGHMVTGRQ QPRLVLVSLT CEGGHVSLNG 120
  121 PQMEELKFPL NNSSDLVVDC RVFSVDVQGR DCGDKVSEWL TRFLEADKPV RLVHYEPDLK 180
  181 PQRPHEKEPL FPKDDEVAYP DAAPVMLMTE ASVGDLNSRL DKDLSVFQFR PSIVVSDCEA 240
  241 FTEDTWDHIR IGEVELKRVI GCGRCLFTTV DPETGVFSRK EPLETLKTYR MTDPKQKTSP 300
  301 ILGQYYTVRK TGVLHVGEPV YKITY

Type	Start	End	Confidence
Cytoplasmic	1	16	0.44
Transmembrane Helix	17	38	0.83
Non-Cytoplasmic	39	325	0.56