YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61402650, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKNSYSQAT FGLEAKKIHK AKKGKSCGYY MRIVFSFSSL IQSLFIASLV LFLVYGQPEK  60
   61 TAEEKRLEDL QQAYDTLSKD HTKLRKEKAD LATALKTKSG EKDAADKEIT KLKTDLNISI 120
  121 AGSKNWQRLN SQCEANAKLK LSSTRNTPLM CPPANPNQSG EVKTLNTLLD QQKALYGILK 180
  181 SNFSQTVEYL KSDLDHAVKD KNEHHSQVIK LRQENKDLKS QLDVYTKKCK EDFADSLQGI 240
  241 QTVTTAFLSK IDNFFTNSVT FHLTCPKQEE QMDRIRSNCS SLSRQVEDKF QSYLNNVGAK 300
  301 VSNIQKQSSW LEIQNEKLTS ELDKCKTEAE KEASDSSKKL QDAQTTCDKQ LEQLLKEQTR 360
  361 LRNAKDLVDT ELSVKEATII SLQKGCTPQA KPSGFQPLGS AGQYPSTSG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.85
Transmembrane Helix	33	55	0.84
Non-Cytoplasmic	56	409	0.97