YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31693-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.87
Transmembrane Helix	50	73	0.91
Cytoplasmic	74	191	0.89
Transmembrane Helix	192	213	0.86
Non-Cytoplasmic	214	218	0.79
Transmembrane Helix	219	237	0.95
Cytoplasmic	238	254	0.75
Transmembrane Helix	255	274	0.88
Non-Cytoplasmic	275	291	0.74
Transmembrane Helix	292	312	0.89
Cytoplasmic	313	330	0.79
Transmembrane Helix	331	351	0.90
Non-Cytoplasmic	352	373	0.93
Transmembrane Helix	374	396	0.92
Cytoplasmic	397	467	0.99
Transmembrane Helix	468	488	0.95
Non-Cytoplasmic	489	494	0.80
Transmembrane Helix	495	511	0.96
Cytoplasmic	512	521	0.78
Transmembrane Helix	522	542	0.91
Non-Cytoplasmic	543	573	0.89
Transmembrane Helix	574	596	0.87
Cytoplasmic	597	612	0.86
Transmembrane Helix	613	633	0.91
Non-Cytoplasmic	634	653	0.76
Transmembrane Helix	654	676	0.91
Cytoplasmic	677	688	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILSNLLVI NSQRLGGSRF QAWPNVRQTR SDIRRQNDGQ QSSGRHVKII HIVKMCILLL  60
   61 LWLGCAFIVF VFAAEQSTRS TMITVMPNKT AMTKVEPPNN ALKVTLHGPV QSNGADGVDL 120
  121 RLEWRSSDLN VTYRRTEVWN IGISNDDTAY AKVSRNFMVK RTGGADSQAV ISLESKRNSP 180
  181 ISLHVVIDTN PMVTDMCLVC AGLLILGLYM LIIFDVIDHT FAALIIATTA VAILAILEHR 240
  241 PSMRAIVSFV NFEPLMLLFG LMTIVDIMAT TGVFDFLVVW TYRISRGRPW PLIFFLSMLT 300
  301 AFLSAFLNSD IMALSLTPIT IRLCEEMSLR TSYVLVVMAI FADMGGALTP LGNPPNAIVT 360
  361 TSPVAVAEGV DFAHFIIHMM PGVLAAMFVV FGIIYVTHRK SIFVLDQNQL DLMEERARGK 420
  421 KPPSQETLDR IALLKGSLPG KYWLRPVEGY PETLAELEAS SRILDKPLLV RCCIALIFAF 480
  481 LCMLLHSIPK VADGASLGWV TLLAAFLLII LDDKNDLNAT LGIIQWTILL FIAALFVLSE 540
  541 AVDQLGFFEW LGDRTVGFLR SLEPQNQIAV TTMVILWTTA LLTIFIDNAA VTIFMLKFSI 600
  601 EMASNDDIPL PPMFWALTFG ACFGGNGSLF GAVSNEIIAL IALQHGYKIS FWHFFAIGFP 660
  661 LMLVTMVIGS GYLLIAHSVL SWNLHLVR