YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Mgat2-PB
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKMRGRILI PLPNTGAMGR KRNNFYMRSL FLLALGIFGL LQYNNFNYLD SRDNVLGDAV  60
   61 TNDSDDAILA MVPATLHKYL TPHSRNHSAS GAGALNGAAL LLNASSPGAA TASTISFDVY 120
  121 HPPNITEIKR QIVRYNDMQM VLNEDVFGPL QNDSVIIVVQ VHTRITYLRH LIVSLAQARD 180
  181 ISKVLLVFSH DYYDDDINDL VQQIDFCKVM QIFYPYSIQT HPNEYPGVDP NDCPRNIKKE 240
  241 QALITNCNNA MYPDLYGHYR EAKFTQTKHH WIWKANRVFN ELEVTRYHTG LVLFLEEDHY 300
  301 VAEDFLYLLA MMQQRTKDLC PQCNVLSLGT YLKTFNYYTY HSKVEVMPWV SSKHNMGFAF 360
  361 NRTTWSNIRK CARHFCTYDD YNWDWSLQHV SQQCLRRKLH AMIVKGPRVF HIGECGVHHK 420
  421 NKNCESNQVI SKVQHVLRIA RNSHQLFPRS LTLTVPSLMK KSKLRKGNGG WGDMRDHELC 480
  481 LNMTLATR

Type	Start	End	Confidence
Cytoplasmic	1	24	0.80
Transmembrane Helix	25	43	0.78
Non-Cytoplasmic	44	488	0.95