YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39A9_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDFSSISLL SLSMLIGCYV AGTIPLAVNF SEEKLKLVTV LGAGLLCGTA LAVIIPEGVH  60
   61 ALYEEMLEGV HNHGHGQVEA EVSEQKVAEG VVRPSGEHGH GHEQLHAYIG ISLVLGFVFM 120
  121 LLVDQIGSAH MHSSDDPEAA RAASSKITTT LGLVVHAAAD GVALGAAAST SQTSVQLIVF 180
  181 VAIMLHKAPA AFGLVSFLMH AGLERNRIRK HLLVFALAAP VLAMVTYVGL SQSSKEALSD 240
  241 VNATGVAMLF SAGTFLYVAT VHVLPEVGGM GGHSHSPGGS AGKGLSKLEV GALVLGCLIP 300
  301 LVLSIGHQH

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.92
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	36	0.83
Transmembrane Helix	37	56	0.94
Non-Cytoplasmic	57	104	0.94
Transmembrane Helix	105	126	0.91
Cytoplasmic	127	146	0.91
Transmembrane Helix	147	168	0.91
Non-Cytoplasmic	169	176	0.80
Transmembrane Helix	177	200	0.87
Cytoplasmic	201	210	0.84
Transmembrane Helix	211	230	0.95
Non-Cytoplasmic	231	242	0.86
Transmembrane Helix	243	264	0.89
Cytoplasmic	265	284	0.87
Transmembrane Helix	285	306	0.87
Non-Cytoplasmic	307	309	0.77