YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|224586370, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRTSQEAY ALRLAADVFI NKKLILTNAI MPALRVKKKA SVIVAAHRMS FRTGRVMQEE  60
   61 QSIQRAVTRL CIQCGLLLLQ HGAESALVDE LSTRLGLALG MDSVESAISS NAIVLTTIKD 120
  121 GQCLTSTRKN QDRGINMHVV TEVQHIVILA EHRLLDYKGV EKRFSQLRPL RYPRWLVAFM 180
  181 VGLSCSCFCK LNNGGWDGAV ITFFASMIAM YIRQMLAQRH LHPQINFCIT AFVATTISGL 240
  241 MLTLPAFSQT PTIAMAASVL LLVPGFPLIN SVADMFKGHI NTGLARWAIA SLLTLATCVG 300
  301 VVMSMTVWGL RGWV

Type	Start	End	Confidence
Cytoplasmic	1	171	0.98
Transmembrane Helix	172	191	0.93
Non-Cytoplasmic	192	197	0.74
Transmembrane Helix	198	217	0.90
Cytoplasmic	218	224	0.91
Transmembrane Helix	225	246	0.92
Non-Cytoplasmic	247	252	0.78
Transmembrane Helix	253	273	0.93
Cytoplasmic	274	286	0.81
Transmembrane Helix	287	308	0.92
Non-Cytoplasmic	309	314	0.81