YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62182900, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNVISSKDN HNHTLVFTGK GGKYFVICLV NFLLTCITLG IYAPWAMVKC RRYIYTNMTL  60
   61 NNQPFAYKAT GGALFISVLL VFIIYIVSLS LIEHGHPGLG FTLFGLLIAI IPFMAVKGLQ 120
  121 YQAMMTSLNG VHFGFQCSMR RAWWYMFALP VLLMVALYIV LYIISLVTIA VGGLVFNIVF 180
  181 LGLLAIIGIG VINGITYSKW MTLFGNGANF GIHRFSIQVN VKTCIRGCVL AMLTLFPFAV 240
  241 VIGYLIAPVF TDMILLSMMG NAQAGGALIL QYYGQIMACY FLYFLAIIVV TSYLYVALRN 300
  301 LFLNNLSLAN DSIRFHSSVT AHGMLWRLLV VFVISGVTLG LAYPWLKIWL VSWLAQNTQV 360
  361 QGDLDSLELT NDEKPLENSL LMWISRGIMP YFPFI

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.82
Transmembrane Helix	24	46	0.92
Cytoplasmic	47	64	0.83
Transmembrane Helix	65	89	0.88
Non-Cytoplasmic	90	97	0.70
Transmembrane Helix	98	121	0.86
Cytoplasmic	122	141	0.85
Transmembrane Helix	142	164	0.92
Non-Cytoplasmic	165	172	0.58
Transmembrane Helix	173	197	0.84
Cytoplasmic	198	223	0.84
Transmembrane Helix	224	247	0.86
Non-Cytoplasmic	248	275	0.51
Transmembrane Helix	276	303	0.76
Cytoplasmic	304	322	0.55
Transmembrane Helix	323	346	0.90
Non-Cytoplasmic	347	395	0.54