YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|205342129, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVIKKKHWW QSDQLKWSVI GLLGLLVGYL VVLMYVQGEY LFAIMTLILS SAGLYIFANR  60
   61 KTYAWRYVYP GLAGMGLFVL FPLVCTIAIA FTNYSSTNQL TFERAQQVLM DRSYQAGKTY 120
  121 NFGLYPSGDE WQLALTDGET GKHYLSDAFS FGGEQKLQLK ETDALPGGER ANLRIITQNR 180
  181 LALNQITAVL PDESKVIMSS LRQFSGTRPL YTLADDGLLT NNQSGVKYRP NNDSGYYQSI 240
  241 NADGSWGDEK LSPGYTVTIG AKNFTRVFTD EGIQKPFFAI FVWTVVFSVL TVVLTVAVGM 300
  301 VLACLVQWEA LKGKAIYRVL LILPYAVPSF ISILIFKGLF NQSFGEINMM LSALFGIKPA 360
  361 WFSDPNTARA MVIIVNTWLG YPYMMILCMG LLKAIPDDLY EASAMDGAGP FQNFFKITLP 420
  421 LLIKPLTPLM IASFAFNFNN FVLIQLLTNG GPDRLGTTTP AGYTDLLVSY TYRIAFEGGG 480
  481 GQDFGLAAAI ATLIFLLVGA LAIVNLKATR MKFD

Type	Start	End	Confidence
Cytoplasmic	1	14	0.96
Transmembrane Helix	15	33	0.95
Non-Cytoplasmic	34	39	0.75
Transmembrane Helix	40	59	0.93
Cytoplasmic	60	67	0.90
Transmembrane Helix	68	91	0.92
Non-Cytoplasmic	92	279	0.99
Transmembrane Helix	280	306	0.88
Cytoplasmic	307	315	0.90
Transmembrane Helix	316	340	0.85
Non-Cytoplasmic	341	369	0.74
Transmembrane Helix	370	392	0.79
Cytoplasmic	393	420	0.69
Transmembrane Helix	421	444	0.71
Non-Cytoplasmic	445	483	0.86
Transmembrane Helix	484	506	0.91
Cytoplasmic	507	514	0.90