YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62130129, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQSQDIIR RSATNGFTPA PQARDHQEEV AKLIDVTTCI GCKACQVACS EWNDIRDEVG  60
   61 NNVGVYDNPA DLTAKSWTVM RFSEVEQNDK LEWLIRKDGC MHCADPGCLK ACPAEGAIIQ 120
  121 YANGIVDFQS EQCIGCGYCI AGCPFNVPRL NPEDNRVYKC TLCVDRVVVG QEPACVKTCP 180
  181 TGAIHFGSKE DMKTLAGERV AELKTRGYDN AGLYDPAGVG GTHVMYVLHH ADKPNLYHGL 240
  241 PENPEISETV KFWKGVWKPL AAFGFAATFA ASVFHYVGVG PSRAEEEDDN LHEEKDEVRK 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	255	0.55
Transmembrane Helix	256	277	0.57
Non-Cytoplasmic	278	300	0.86