YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62129435, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPYGPQKTT LLLFFSAVDT MRLNCPCEGH SLWLVFTPAS VGNSKNPALL VEALVRGNSA  60
   61 RNRLIMYEAL LVVFLIVAIG LVGLIMLQQG KGADMGASFG AGASATLFGS SGSGNFMTRM 120
  121 TAVLATLFFI ISLVLGNINS NKTNKGSEWE NLSAPAKTEQ TQPAAPAQPA SDIPR

Type	Start	End	Confidence
Cytoplasmic	1	63	0.96
Transmembrane Helix	64	87	0.89
Non-Cytoplasmic	88	115	0.75
Transmembrane Helix	116	138	0.84
Cytoplasmic	139	175	0.81