YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62128629, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWWQGVRTT ENIMMQDLRL ILIIVGAIAI IALLVHGFWT SRKERSSMFR DRPLKRMKSK  60
   61 RDDDSYDDDV EEDEGVGEVR VHRVNHAPGQ SQEHDAPRQS PQHQYQPPYA SAQPRPAAPP 120
  121 QPQAPMQQPV QQPVQPAPQP QQVQPSAPPV QPPQQQPAPP SQAPQPVAQP APPPSAQTFQ 180
  181 PAEPVVEAEP IVEEAPVVEK PQRKEAVIIM NVAAHHGSEL NGEVLLNSIQ QSGFKFGDMN 240
  241 IFHRHLSPDG SGPALFSLAN MVNPGTFDPE MTDFTTPGVT IFMQVPSYGD ALQNFKLMLQ 300
  301 SAQHIADEVG GVVLDDQRRM MTPQKLREYQ DRIREVMDAN A

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	40	0.96
Non-Cytoplasmic	41	341	0.88