YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62128576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQRTVLERL ITRLISLTQQ QSAEVWAGMK HDLGIKNDAP LLSRHFPAAE QNLTQRLGVA  60
   61 QQNHANRQVL LQLTELLGVG NNRQAVSDFI RQQYGQTALS QLTPDQLKNV LTLLQQGQLS 120
  121 IPQPQQRPAT DRPLLPAEHN TLNQLVTKLA AATGESNKLI WQSMLELSGV KSGELIPAKQ 180
  181 FTHLATWLQA RQTLSLQHAP TLHTLQAAFK QPLEPDELTA IKEYAQHTYQ IQPQTVLTTA 240
  241 QVQDLLNHIF LRRVERETDE LEPLSIQPIY RPFAPMIETV KNLSARPGLL FIALIIVLAL 300
  301 FWLVS

Type	Start	End	Confidence
Cytoplasmic	1	282	0.67
Transmembrane Helix	283	304	0.90
Non-Cytoplasmic	305	305	0.68