YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238912560
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVWRPGITG KLFLAIFATC IVLLISMHWA VRVSFERGFI DYIKHGNEQR LQMLGDALGD  60
   61 QYQQHGNWRF LRNNDRFVFQ ILRSFEHDND RDKPGPGMPP HGWRTQFWVV DQNGRVLVGP 120
  121 RGPVPHDGTR RPILVNGVEV GAIIASPVER LTRNTDINFD MQQRRASWMI VALSTLLAAL 180
  181 ATFLLARGLL APVKRLVEGT HRLAAGDFTT RVTPTSADEL GKLAQDFNQL ASTLEKNQQM 240
  241 RRDFMADISH ELRTPLAVLR GELEAIQDGV RQFTPESVTS LQAEVGTLTK LVDDLHQLSL 300
  301 SDEGALAYQK TTVDLVPLLE VAGGAFRERF TSRGLTLHYA LPDSMTVFGD PDRLMQLFNN 360
  361 LLENSLRYTD SGGGLHISAE QRDKSLFLTF ADSAPGVSDE QLQKLFDRFY RTEVSRNRAS 420
  421 GGSGLGLAIC VNIVHAHNGH LHAAHSPFGG VSITVELPLD RDLQREV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.59
Transmembrane Helix	10	31	0.76
Non-Cytoplasmic	32	167	0.80
Transmembrane Helix	168	190	0.85
Cytoplasmic	191	418	0.75
Transmembrane Helix	419	436	0.47
Non-Cytoplasmic	437	467	0.64