YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62179585, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCEHHHAAKH ILCPQCDMLV ALPRLSHGQK AACPRCGATL TTEWDAPRQR PTAYALAALF  60
   61 MLLLSNLFPF VNMNVAGVTS EVTLLEIPGV MFSEDYASLG TFFLLFVQLV PAFCLVTILL 120
  121 LVNRACLPLS VKKTLARIFF LLKSWGMAEI FLAGVLVSFV KLMAYGDIGI GSSFIPWCLF 180
  181 CLVQLRAFQC VDRRWLWDDI APQPAVAQPL TPGITGIRQS LRSCACCTAI LPAESLVCPR 240
  241 CHTKGYVRRK NSLQWTLALL FTSIMLYLPA NILPIMITDL LGSKMPSTIL AGVILLWSEG 300
  301 AYLVAAVIFL ASIMVPTLKM IAIAWLCWDA KGHGKRDSER MHFIYEVVEF VGRWSMIDVF 360
  361 VIAVLSALVR MGGLMNIYPA MGALMFALVV IMTMFSAMTF DPRLSWDREY EPGHEES

Type	Start	End	Confidence
Cytoplasmic	1	51	0.99
Transmembrane Helix	52	73	0.87
Non-Cytoplasmic	74	98	0.90
Transmembrane Helix	99	122	0.90
Cytoplasmic	123	138	0.88
Transmembrane Helix	139	160	0.90
Non-Cytoplasmic	161	167	0.69
Transmembrane Helix	168	188	0.91
Cytoplasmic	189	254	0.97
Transmembrane Helix	255	277	0.89
Non-Cytoplasmic	278	300	0.80
Transmembrane Helix	301	323	0.81
Cytoplasmic	324	349	0.86
Transmembrane Helix	350	369	0.93
Non-Cytoplasmic	370	376	0.72
Transmembrane Helix	377	400	0.87
Cytoplasmic	401	417	0.96