YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62179190, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVFRSYGM PSLNVKQEKN QSFAGYSLPP ANIHEIDLFS LIEVLWQAKR RILATVFAFA  60
   61 CVGLLLSFLL PQKWTSQAIV TPAESVQWQG LERTLTALRV LDMEVSVDRG SVFNLFIKKF 120
  121 SSPSLLEEYL RSSPYVMDQL KGAQIDEQDL HRAIVLLSEK MKAVDSNAGK KNETSLFTSW 180
  181 TLSFTAPTRE EAQKVLAGYI QYISDIVVKE TLENIRNQLE IKTRYEQEKL AMDRVRLKNQ 240
  241 LDANIQRLHY SLEIANAAGI KRPVYSNGQA VKDDPDFSIS LGADGISRKL EIEKGVTDVA 300
  301 EIDGDLRNRQ YHVEQLEAMN VSDVKFTPFK YQLSPSLPVK KDGPGKAVII ILAALIGGMM 360
  361 ACGGVLLRHA MVSRKMENSL AIDERLV

Type	Start	End	Confidence
Cytoplasmic	1	51	0.95
Transmembrane Helix	52	70	0.94
Non-Cytoplasmic	71	346	0.97
Transmembrane Helix	347	367	0.95
Cytoplasmic	368	387	0.90