YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62126687, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.96
Transmembrane Helix	16	39	0.91
Cytoplasmic	40	56	0.92
Transmembrane Helix	57	78	0.90
Non-Cytoplasmic	79	101	0.96
Transmembrane Helix	102	127	0.88
Cytoplasmic	128	143	0.84
Transmembrane Helix	144	166	0.87
Non-Cytoplasmic	167	190	0.93
Transmembrane Helix	191	213	0.93
Cytoplasmic	214	229	0.88
Transmembrane Helix	230	253	0.89
Non-Cytoplasmic	254	277	0.92
Transmembrane Helix	278	299	0.85
Cytoplasmic	300	310	0.75
Transmembrane Helix	311	335	0.86
Non-Cytoplasmic	336	345	0.79
Transmembrane Helix	346	366	0.92
Cytoplasmic	367	379	0.83
Transmembrane Helix	380	403	0.87
Non-Cytoplasmic	404	416	0.86
Transmembrane Helix	417	440	0.90
Cytoplasmic	441	455	0.96
Transmembrane Helix	456	476	0.94
Non-Cytoplasmic	477	493	0.84
Transmembrane Helix	494	517	0.87
Cytoplasmic	518	590	0.97
Transmembrane Helix	591	615	0.83
Non-Cytoplasmic	616	663	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGKLSLDAV PFHEPIVMVT IAAIIVGGLA ILAAITYFGK WTYLWKEWLT SVDHKRLGIM  60
   61 YIIVAIVMLL RGFADAIMMR SQQALASAGE AGFLPPHHYD QIFTAHGVIM IFFVAMPFVI 120
  121 GLMNLVVPLQ IGARDVAFPF LNNLSFWFTV VGVILVNLSL GVGEFAQTGW LAYPPLSGIE 180
  181 YSPSVGVDYW IWALQLSGIG TTLTGINFFV TILKMRAPGM TMFKMPVFTW ASLCANVLII 240
  241 ASFPILTVTV ALLTLDRYLG THFFTNDMGG NMMMYINLIW AWGHPEVYIL ILPVFGVFSE 300
  301 IAATFSRKRL FGYTSLVWAT VCITVLSFIV WLHHFFTMGA GANVNAFFGI TTMIIAIPTG 360
  361 VKIFNWLFTM YQGRIVFHSA MMWTIGFIVT FSVGGMTGVL LAVPGADFVL HNSLFLIAHF 420
  421 HNVIIGGVVF GCFAGMTYWW PKAFGFKLNE TWGKRAFWFW IIGFFVAFMP LYVLGFMGMT 480
  481 RRLSQQIDPQ FHTMLMVAAA GAALIAQGIL CQLIQIFVSI RDRDQNRDLT GDPWGGRTLE 540
  541 WSTSSPPPFY NFAVVPHVHE RDAFWEMKEK GEAYQQPGQY EEIHMPKNSG AGIVIAAFAT 600
  601 VFGFAMIWHI WWLAIVGFAG MIISWIVKSF DEDVDYYVPV PEVEKLENQH FDEITKAGLK 660
  661 NGN