YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62179051, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	21	0.99
Transmembrane Helix	22	44	0.90
Non-Cytoplasmic	45	52	0.83
Transmembrane Helix	53	75	0.94
Cytoplasmic	76	93	0.90
Transmembrane Helix	94	115	0.91
Non-Cytoplasmic	116	122	0.64
Transmembrane Helix	123	142	0.92
Cytoplasmic	143	147	0.89
Transmembrane Helix	148	169	0.91
Non-Cytoplasmic	170	176	0.79
Transmembrane Helix	177	198	0.90
Cytoplasmic	199	222	0.87
Transmembrane Helix	223	241	0.91
Non-Cytoplasmic	242	247	0.64
Transmembrane Helix	248	267	0.91
Cytoplasmic	268	278	0.83
Transmembrane Helix	279	300	0.91
Non-Cytoplasmic	301	311	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPQLQHDDA LRAASMMFKQ YLQVTKPGII FGNLISVIGG FLLASKGSID YPLFIYTLVG  60
   61 VSLVVASGCV FNNYIDRDID RKMERTKNRV LVKGLISPGV SLVYATLLGI AGFMLLWFGA 120
  121 NPLACWLGVM GFVVYVGVYS LYMKRHSVYG TLIGSLSGAA PPVIGYCAVT GDFDSGAAIL 180
  181 LAIFSLWQMP HSYAIAIFRF KDYQAANIPV LPVVKGISVA KNHITLYIIA FAVATLMLTL 240
  241 GGYAGYKYLV VAAAVSVWWL GMALRGYKVE DDKVWARKLF GFSIIAITAL SIMMSVDFMV 300
  301 PNSQNLLTYV W