YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDFYNRLR RNTKYLETQI AFFSLPQGIS NSGIHMKKTL LAVSAALALT SSFTANAAEN  60
   61 DQPQYLSDWW HQSVNVVGSY HTRFSPKLNN DVYLEYEAFA KKDWFDFYGY IDIPKTFDWG 120
  121 NGNDKGIWSD GSPLFMEIEP RFSIDKLTGA DLSFGPFKEW YFANNYIYDM GDNKASRQST 180
  181 WYMGLGTDID TGLPMGLSLN VYAKYQWQNY GASNENEWDG YRFKVKYFVP ITDLWGGKLS 240
  241 YIGFTNFDWG SDLGDDPNRT SNSIASSHIL ALNYDHWHYS VVARYFHNGG QWQNGAKLNW 300
  301 GDGDFSAKST GWGGYLVVGY NF

Type	Start	End	Confidence
Signal Peptide	1	57	0.87
N-region	1	48
H-region	49	54
C-region	55	57
Cleavage Site	57	58
Non-Cytoplasmic	58	322	0.99