YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62178792, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIPAVIAAL FLLPPVGFAI ITLVVCMLAA WEWGQLSGFA ARSQRVWLAV LCGLLLALML  60
   61 FLLPEYHHNI RQPLVEMSLW ASLGWWVVAL LLVLFYPGSA AIWRNSKTLR LIFGLLTIVP 120
  121 FFWGMLALRA WHYDENHYSG AIWLLYVMIL VWGADSGAYM FGKLFGKHKL APKVSPGKTW 180
  181 QGFIGGLATA AVISWGYGMW ANLNVAPVIL LICSVVAALA SVLGDLTESM FKREAGIKDS 240
  241 GHLIPGHGGI LDRIDSLTAA VPVFACLLLL VFRTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	31	0.87
Cytoplasmic	32	45	0.86
Transmembrane Helix	46	64	0.96
Non-Cytoplasmic	65	80	0.81
Transmembrane Helix	81	100	0.91
Cytoplasmic	101	110	0.75
Transmembrane Helix	111	131	0.94
Non-Cytoplasmic	132	140	0.82
Transmembrane Helix	141	162	0.92
Cytoplasmic	163	178	0.90
Transmembrane Helix	179	199	0.92
Non-Cytoplasmic	200	204	0.82
Transmembrane Helix	205	227	0.87
Cytoplasmic	228	253	0.89
Transmembrane Helix	254	272	0.68
Non-Cytoplasmic	273	275	0.54