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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60302679, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEADRSFGLA WVLLLLLGIT AATGREVCLG TDMKLALPSS LENHYEMLRL LYTGCQVVHG  60
   61 NLEITHLQGN PDLSFLQEIV EVQGYVLIAH VSVRSLPLDN LRIIRGSQLY KSNYALAVHN 120
  121 NSNSSQAGLG LRELRLRSLT EILLGGVYIW GNPQLCFPRN INWEDTVSKV QNKPLHLQDI 180
  181 PKNCPRCSSA CKSGGCWGEK DQDCQTLTSV NCSSGCSRCK GPKPSDCCHV QCAAGCTGPK 240
  241 DSDCLACRHF NDSGTCKDSC PPPTIYDPIT FQSKPNKDKK FSFGATCVKQ CPHNYLAMEV 300
  301 ACTMVCPKAN KEVISVEPDG QETQKCEKCE GECPKVCYGL GMGNLQGVSV VNSTNIGMFT 360
  361 GCEKIYGSLA FLSDSFKGNA DTNSSGLQPS DLEKLKTIEE ITGYLYIDAW SENLLDLSVF 420
  421 ENLKVIRGQM LYKGVFSLGV QSLQIESLGL RSLRSVSGGL VLIHNNSRLC YTSSLPWTSL 480
  481 LHPTQGPNLI SNNNKDQQTC VSEGKICDPL CGDSGCWGPG PSQCVSCLNY KRGTECVELC 540
  541 NVLHGSVREF EDGFNCVPCH PECRPINGTA SCTGPGPDQC TDCMHFQDGD VCVERCPSGV 600
  601 KEEQHTVWKY SNATGHCLPC ETNCTVSCPL DDRGCPIQQK TGPGTTVAIT VGGVLLFIIL 660
  661 LALLVFYLRR QKHQKKKETI RRRLQEHELV EPLTPSGAMP NQAQMRILKE TELKKLRVLG 720
  721 SGAFGTVFKG IWAPDGENVR IPVAIKVLRE NTSPKANKEI LDEAYVMAGV ASPYVCRLLG 780
  781 ICLTSTVQLV TQLMPYGCLL DYVRENKDRI GSQYLLSWCV QIAKGMSYLE EVRLVHRDLA 840
  841 ARNVLVKNPN HVKITDFGLA RLLDIDEKEY HADGGKVPIK WMALESILHR KFTHQSDVWS 900
  901 YGVTVWELMT FGMKPYESFQ ARDIPELLEA GERLSQPCNC TKEVYMIMVK CWQIDPDNRP 960
  961 RFKDLVDEFT TMARDPSRYV VIQNEDQMSL SSPVDSEFFR ILMAEEGGNV KEFLDAEEYL1020
 1021 VPQPGSIFNT HGEMRANGPS RHHSHRSTDQ MVEVDGLPNG RELYSSVSMI EQSQYPTLPV1080
 1081 GATANGMWPG TQYPPLARSI SHRSAGGQSD SVFLDGYVED SCPPSSPCRY SKDPTMPNGI1140
 1141 DGDLETDGNM VFLSHTLPRG THTQPEYVNQ DMASERPSTL PRKASERRFI LNGLSTGNSV1200
 1201 ENPEYLVPIG SITPTSPAFD NPYYHDIAAK AQAVARVAIN GGTNHRQPNG FMTPTAENPE1260
 1261 YLGLADTWSG HKEYT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle