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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62414151, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQQVLALCA LLFLCVPQPV TSQTQEVCTG TKNALSSTGT PEQHYNNLKE RYTGCEIVMG  60
   61 NLEITQMEND LDFSFLGSIR EVTGYILIAM NQFRKLPLNQ LRVIRGSSLY DKEWALSVFH 120
  121 NFDTHTGLED LGLTNLTEIL EGGVQIVHNR NLSYAPLINW QDIVRDGDAR IQIQDNGGRG 180
  181 SCNPACGEFC WGPSNDQCQK LTKTVCALQC LGHCFGTNPN ECCHPECAGG CTGPRDTDCF 240
  241 ACRHVNYSGS CVPHCPWPVV YNQQTFQVEP NADAMYQFGS ICVPKCPGHF VVDGSACVSS 300
  301 CPPGKTEIEK NQIKQCETCI GLCPKVCEGT GANHRQTVDS SNIDSFINCT KIQGSLHFLI 360
  361 LGIKGDVYNN IPPLEPEKLK VFNTVREITG ILNIQSWPDE LHDLSVFSSL TTIQGRSLYN 420
  421 PNTPFSMLMM KIPSLTSLGL RSMREISDGS VYITQNMNLC YHHTINWTQI FPRNQLQRRR 480
  481 NDIKENKQKI QCEEEGHVCD PLCSDAGCWG PGPEQCLSCR NYSRLGTCVS HCNLYSGEPR 540
  541 EFAASNKECL ACHSECLLQN GKQTCLGKGA DQCVACSNLM DGPHCVSSCP NGVNGEKGQT 600
  601 IFKYSTAAGH CELCHFNCTR GCTGPALRDC VDPDRNVNSS QIAGIAVAVF AGITVLLALF 660
  661 VLGMLYHRGL AIRRKRALRR YLESGESMEP LDPGEKGTKV HARILKPQEL RKGKLLGYGV 720
  721 FGTVNKGFWI PEGDSLKIPV AIKTIQNRSS RQTFTEITDH MLSMGSLDHP YIVRLIGICP 780
  781 GASLQLITQL SPHGSLLQHL RQHKDSLDPQ RLLNWCVQIA KGMYYLEEHC MAHRNLAARN 840
  841 ILLKSDYIVQ ISDFGVADLL YPDDKKYVYS EHKTSIKWMA LESILFGRYT HQSDVWSYGV 900
  901 TVWEMMSYGA EPYASMHPHD VPGLLEKGER LAQPQICTID VYMVMVKCWM IDENVRPTFK 960
  961 ELASEFTRMA RDPPRYLVVR PAQNGGGAEE SQRYVKSSHL EVGLEEEDDD EDEGLQVGFA1020
 1021 TPPLQLSPTR SHSRVRIASY KSTSEHTAPI GYLPMTPGPG DEPRQLRAQR RKTGSVRTES1080
 1081 ECSEGRGTIV DIEAVEITSQ TGSLRRGRSR MDSAYISGGV SVASDPFSSG LEGVDEDHYG1140
 1141 YVLPTERDFR SAVPHGRTSR NSKSTPKTDA TQEYELMNKQ TNKLSSSPTD STDHLKPASL1200
 1201 VSAHICSSLP QKKEMDSAQT QDEILPQKRE TDSTQSQENN LPQKSETDST QTQESEKDAS1260
 1261 FQPDNFESAE NCLIGSETLN DGGQSEEEEQ QPRLAMVEYE YMDIRTDEHQ QNVAGKRTTN1320
 1321 GPNEVEREAI YQNISQPLRF HENPDSAGNT MQRRGEYVDM EASGRSGCEV GDYQNVPVKG1380
 1381 RPVVGEESQN TGLRSYIKVC AGVEPQNTSF DNPDYWHSRL FHKQDTVCT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle