YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.77
Transmembrane Helix	63	84	0.76
Cytoplasmic	85	93	0.73
Transmembrane Helix	94	117	0.78
Non-Cytoplasmic	118	126	0.75
Transmembrane Helix	127	146	0.92
Cytoplasmic	147	160	0.88
Transmembrane Helix	161	182	0.89
Non-Cytoplasmic	183	194	0.82
Transmembrane Helix	195	214	0.86
Cytoplasmic	215	223	0.87
Transmembrane Helix	224	245	0.91
Non-Cytoplasmic	246	256	0.73
Transmembrane Helix	257	275	0.95
Cytoplasmic	276	295	0.84
Transmembrane Helix	296	314	0.87
Non-Cytoplasmic	315	344	0.65
Transmembrane Helix	345	363	0.86
Cytoplasmic	364	381	0.70
Transmembrane Helix	382	406	0.89
Non-Cytoplasmic	407	413	0.68
Transmembrane Helix	414	435	0.81
Cytoplasmic	436	444	0.77
Transmembrane Helix	445	467	0.91
Non-Cytoplasmic	468	816	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGDISHMS PEVKWIFEMA WYGETVRYDG LICEEHPPKL SSDGIWEKLI IKSAGLYFWQ  60
   61 YRLPKLEIVI LLVFFLWQGF NILFKKLGLS IPKLSSMMLA GLLLNVLVTL SGENSIIADI 120
  121 LVTKNRIDVA GCLGSFGFLI FWFLKGVRMD VKRIFKAEAK ARVTGVAAVT FPIVVGFLLF 180
  181 NLKSAKNRPL TFQEYDVMLL MESITSFSGI ARLLRDLGMN HSSIGRVALS SALVSDIVGL 240
  241 LLLIANVSRS SATLADGLAI LTEITLFLVI AFAVVRPIMF KIIKRKGEGR PIEDKYIHGV 300
  301 LVLVCLSCMY WEDLSQFPPL GAFFLGLAIP NGPPIGSALV ERLESFNFGI ILPLFLTAVM 360
  361 LRTDTTAWKG ALTFFSGDDK KFAVASLVLL IFLLKLSVSV IVPYLYKMPL RDSIILALIM 420
  421 SHKGIIELSF YLFSLSLKLV TKDTFSILVL SIVLNSLLIP MAIGFLYDPS KQFICYQKRN 480
  481 LASMKNMGEL KTLVCIHRPD HISSMINLLE ASYQSEDSPL TCYVLHLVEL RGQDVPTLIS 540
  541 HKVQKLGVGA GNKYSENVIL SFEHFHRSVC SSISIDTFTC IANANHMQDD ICWLALDKAV 600
  601 TLIILPFHRT WSLDRTSIVS DVEAIRFLNV NVLKQAPCSV GILIERHLVN KKQEPHESLK 660
  661 VCVIFVGGKD DREALAFAKR MARQENVTLT VLRLLASGKS KDATGWDQML DTVELRELIK 720
  721 SNNAGMVKEE TSTIYLEQEI LDGADTSMLL RSMAFDYDLF VVGRTCGENH EATKGIENWC 780
  781 EFEELGVIGD FLASPDFPSK TSVLVVQQQR TVANNN