YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57866873, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNEKEINGK KSHFFSLSES RFMRFLGGND LIYALIALVL LGIVIFIFDK ISYVFQPFII  60
   61 VFNTIAAPII VSLVLFYLFN PIVNMMERYR IPRLLGITII YVAIVGIITL IVNLLIPIIG 120
  121 SQIESFIKNT PNYLHKITRS LDKLNNNTIL SGYMGQVNEW LESAQKKIPS MVSDYSDGFG 180
  181 SKLATFAEAV ANIGIVIGTT PFVLFFMLKD GHKFKDYTTK IMPPKFRKDF HDLLEKMSVQ 240
  241 VGSYIQGQII VSFCIGLLLF IGYSIIGLKY ALVLASIAAV TSVVPYLGPT IAISPAIVIA 300
  301 IITSPLMLLK LAVVWTLVQF FEGHFISPNV MGKTLKIHPL TIIFILLCAG NLMGIVGVII 360
  361 GIPLYAVLKV LVSHIFMLFK RRYNRYYGND AGEYTITEEE KGIKQ

Type	Start	End	Confidence
Cytoplasmic	1	30	0.88
Transmembrane Helix	31	48	0.96
Non-Cytoplasmic	49	57	0.76
Transmembrane Helix	58	79	0.93
Cytoplasmic	80	93	0.87
Transmembrane Helix	94	119	0.85
Non-Cytoplasmic	120	184	0.97
Transmembrane Helix	185	208	0.86
Cytoplasmic	209	243	0.94
Transmembrane Helix	244	266	0.84
Non-Cytoplasmic	267	269	0.61
Transmembrane Helix	270	290	0.72
Cytoplasmic	291	295	0.45
Transmembrane Helix	296	321	0.77
Non-Cytoplasmic	322	339	0.64
Transmembrane Helix	340	372	0.82
Cytoplasmic	373	405	0.82