YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57636029, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.98
Transmembrane Helix	5	25	0.96
Cytoplasmic	26	153	0.99
Transmembrane Helix	154	172	0.93
Non-Cytoplasmic	173	191	0.84
Transmembrane Helix	192	212	0.95
Cytoplasmic	213	219	0.90
Transmembrane Helix	220	241	0.94
Non-Cytoplasmic	242	248	0.77
Transmembrane Helix	249	270	0.92
Cytoplasmic	271	277	0.86
Transmembrane Helix	278	301	0.88
Non-Cytoplasmic	302	307	0.93
Transmembrane Helix	308	330	0.91
Cytoplasmic	331	340	0.84
Transmembrane Helix	341	359	0.94
Non-Cytoplasmic	360	365	0.85
Transmembrane Helix	366	387	0.90
Cytoplasmic	388	406	0.90
Transmembrane Helix	407	428	0.92
Non-Cytoplasmic	429	437	0.78
Transmembrane Helix	438	460	0.87
Cytoplasmic	461	467	0.79
Transmembrane Helix	468	486	0.93
Non-Cytoplasmic	487	502	0.79
Transmembrane Helix	503	523	0.90
Cytoplasmic	524	539	0.81
Transmembrane Helix	540	559	0.89
Non-Cytoplasmic	560	615	0.95
Transmembrane Helix	616	634	0.95
Cytoplasmic	635	658	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATFIIIYI VVALILIGFI NFFLIKRKRK NKDKRVEQRS TIDSKRESNQ SKFKASDLEQ  60
   61 TTKSNTDPTQ SNDIEDEKRK NHFDSEIDNA SQSINTDSKE DRNALSHKNQ EEDDASNDVL 120
  121 NPIDPNSTEG RVNERIKNQE SNFIFGKGIT RGKILAAMLF GMFIAILNQT LLNVALPKIN 180
  181 TEFNISASTG QWLMTGFMLV NGILIPISAF LFNKYSYRKL FIIGLALFTL GSLVCAISFN 240
  241 FPIMMSGRVL QAIGAGILMP LGSNVIVTIF PPEKRGVAMG TMGIAMILAP AIGPTLSGYI 300
  301 VQNYDWNVMF YGMFFIGIIA IVIGLFWFKL YQSTTNPKAD IPGIIYSTIG FGSLLYGFSE 360
  361 AGNKGWGSTE IVTMFIVGTV FIIFFILREL RMKAPMLSLE VLKYPTYTLT TVINMIVMMS 420
  421 LYGGMILLPL YLQNLRGFSA LDSGLLLLPG ALVMGALGPV AGKLLDTIGI KPLAIFGIGI 480
  481 MTYATWELSK LNMDTTYLHI MWIYIVRSFG MAFVMMPIMT AGMNALPPRL ISHGNAFVNT 540
  541 MRQLAGSIGT AILVTVMTTQ QTNHLSAFSE ELDKTNPVIQ DHMRELAQQY GGESAAMKLL 600
  601 LEHVNKLASV EGVNDAFIVA TIISAIALIL SLFLQGKKKA QLSAEKANAE DYPSQQDK