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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SCUB2_DANRE
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVWTVRLL CLFLLLLNTR QSAALPHNTD QCAEGSDACH IDAICQNTPT SYKCTCKTGF  60
   61 KGDGKHCEDI DECDVEYNGG CVHECNNIPG NYRCTCLDGF HLAHDGHNCL DVDECVFNNG 120
  121 GCQHVCVNTM GSYECRCKQG FFLSDNQHTC IHRSVEGLSC MNKEHGCGHI CKESPKGGVA 180
  181 CECRPGFELA KNQRGCILTC NHGNGGCQHI CEDTEQGPIC RCHVRYMLHA DGRTCVERDE 240
  241 MAPTAPDHNA TSLAEVDKRV KRRLLMETCA VNNGGCDSTC KDTSTGVRCS CPVGFTLQPD 300
  301 GKSCKDIDEC ELHNGGCDHY CRNTIGSFEC SCRKGFKLLT DERSCQDIDE CFFERTCDHT 360
  361 CVNSPGSFQC VCNKGYTLYG LAHCGDINEC SFNNGGCEHT CENTMGSFGC HCRAGYKLHW 420
  421 NKKDCIEAED SPLVPPPARP TLNCNKQGGG ELCYLTCQSQ VHISSGAEDS YTVTCGMPLP 480
  481 CHTGGQWNGS YCPGSGIKTI ATFKSGQGKC NLKRSHENLA HSFKTALSDK RATENVQFSF 540
  541 VSLHCASSSR QQRSRHGRKA GEEEGSFITA QFELDVNLEE VTAEGCDLTC VRRRSEKRLR 600
  601 KTIRTLRKSI NREQFHLHFA GSEYELAKKL VRPADTPDHC GTGQILLDKK CVKCSVGTYY 660
  661 DGEQGRCFLC PPGTYQDEEG QVSCDVCPGP EGRGIPETAG ARNISECAGQ CRPGQFSHDG 720
  721 FVPCLPCPQG TYQPEVGRTS CFTCGGSLTT KYDGSVSFQN CETKVQCSPG HYYNTSTHRC 780
  781 IRCPVGTYQM EFGQNYCIAC PGNTTTDFDG STNIMQCKNR HCGGELGEFT GYIESPNYPG 840
  841 NYPANIECTW TITPPPKRRI LVVVPEIYLP IEDECGDYLV MRKSSLPNSV TTYETCQTYE 900
  901 RPIAFTSRSK KLWIQFRSNE GNSGKGFQVP YVTYDEDYQE LIEDIVRDGR LYASENHQEI 960
  961 LKDKKLMRAL FDVLAHPQNF FNYTAQESRE MFPKSFIRFL RSKVLRFLRP 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle