YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61613031
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSSPWPPR PSPSAGLSLE ARLGVDTRLW AKVLFTALYS LIFAFGTAGN ALSVHVVLKA  60
   61 RAGRPGRLRY HVLSLALSAL LLLLVSMPME LYNFVWSHYP WVFGDLGCRG YYFVRELCAY 120
  121 ATVLSVASLS AERCLAVCQP LRARRLLTPR RTRRLLSLVW VASLGLALPM AVIMGQKHEV 180
  181 ESADGEPEPA SRVCTVLVSR ATLQVFIQVN VLVSFALPLA LTAFLNGITV NHLMALYSQE 240
  241 PSWLCMSSAG CRTMPADSCT ATSPMMDGLM SSMISITIST W

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.92
Transmembrane Helix	35	58	0.86
Cytoplasmic	59	69	0.90
Transmembrane Helix	70	92	0.89
Non-Cytoplasmic	93	116	0.84
Transmembrane Helix	117	136	0.90
Cytoplasmic	137	154	0.91
Transmembrane Helix	155	175	0.92
Non-Cytoplasmic	176	210	0.92
Transmembrane Helix	211	233	0.81
Cytoplasmic	234	281	0.79