YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61103042, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVCTNDEACQ YKSAEWQCDP RCICWVQRSV GSLIVDCRGT SLEELPDLPR TTLLSTVLKV  60
   61 GNNSLTSLPT VSEHSGYANV SGLFLSDNNL TSLGSGDQLP DNLTHLDVRD NQIQSLSEEF 120
  121 LLFLQEPNNT MTLSLSGNPI TCGCESLSLL FFVRTNPQRV RDIADIVCTK QKKSFQQMEA 180
  181 FELCPSYVLL ISCVVGGLVI VICLLTVFYL MFQQELKIWL YNNNLCLWWV SEEELDKDKT 240
  241 YDAFISYSHK DEELISKLLP KLESGPHPFR LCLHDRDWLV GDCIPEQIVR TVDDSKRVII 300
  301 VLSQHFIDSV WARMEFRIAY QATLQDKRKR IIIILYRELE HMNG

Type	Start	End	Confidence
Cytoplasmic	1	186	0.58
Transmembrane Helix	187	211	0.92
Non-Cytoplasmic	212	344	0.61