YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TX261_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGVTLANVL PVCLALLPPP AAGLYYLAEL IEEYTVATSR IIKYMIWFST AVLIGLYVFE  60
   61 RFPTYMIGVG LFTNLVYFGL LQTFPFIMLT SPNFILSCGL VVVNHYLAFQ FFAEEYYPFS 120
  121 EVLAYFTFCL WIIPFAFFVS LSAGENVLPS TMQPGDDVVS NYFTKGKRGK RLGILVVFSF 180
  181 IKEAILPSRQ KIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.49
Transmembrane Helix	7	28	0.63
Cytoplasmic	29	40	0.64
Transmembrane Helix	41	59	0.83
Non-Cytoplasmic	60	64	0.48
Transmembrane Helix	65	84	0.66
Cytoplasmic	85	85	0.29
Transmembrane Helix	86	113	0.71
Non-Cytoplasmic	114	121	0.53
Transmembrane Helix	122	144	0.89
Cytoplasmic	145	193	0.56