YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60422761
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITKEHALAQA ELLKRQEELE RKAAELDRRE REMQNLSQHG RKNNWPPLPS NFPVGPCFYQ  60
   61 DFSVDIPVEF QKTVKLMYYL WMFHAVTLFL NIFGCLAWFC VDSSRAVDFG LSILWFLLFT 120
  121 PCSFVCWYRP LYGAFRSDSS FRFFVFFFVY ICQFAVHVLQ AAGFHNWGNC GWISSLTGLN 180
  181 KNIPVGIMMI IIAALFTASA VISLVMFKKV HGLYRTTGAS FEKAQQEFAT GVMSNKTVQT 240
  241 AAANAASTAA TSAAQNAFKG NQM

Type	Start	End	Confidence
Cytoplasmic	1	79	0.98
Transmembrane Helix	80	101	0.95
Non-Cytoplasmic	102	108	0.89
Transmembrane Helix	109	131	0.88
Cytoplasmic	132	142	0.84
Transmembrane Helix	143	164	0.91
Non-Cytoplasmic	165	184	0.92
Transmembrane Helix	185	207	0.93
Cytoplasmic	208	263	0.98