YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60416032
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPQVIRILY VLSFFFFQGG FIRLGSCKEE IKSSSRPAQK PMSPSDFLDK LMGRTSGYDA  60
   61 RIRPNFKGPP VNVTCNIFIN SFGSITETTM DYRLNVFLRQ QWNDPRLAYS EYPDASLDLD 120
  121 PSMLDSIWKP DLFFANEKGA NFHEVTTDNK LLRIFQNGNV LYSIRLTLIL SCPMDLKNFP 180
  181 MDIQTCTMQL ESFGYTMNDL IFEWLSDNPV QVADDLTLPQ FVLKEEKDLG YCTKHYNTGK 240
  241 FTCIEVKFHL ERQMGYYLIQ MYIPSLLIVI LSWVSFWINM DAAPARVGLG ITTVLTMTTQ 300
  301 SSGSRASLPK VSYVKAIDIW MAVCLLFVFA ALLEYAAVNF VSRQHKEFIR LRKKQRRQRI 360
  361 EEDLVRESRG FYFRGYGLGH CLQTKDGTAV EGSSVFAPPP PVQVLYDGEA VRKRFVDRAK 420
  421 RIDTISRAVF PLSFLIFNVF YWITYKVLRH EDIHANP

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.77
Transmembrane Helix	6	27	0.75
Cytoplasmic	28	255	0.87
Transmembrane Helix	256	277	0.91
Non-Cytoplasmic	278	318	0.70
Transmembrane Helix	319	341	0.89
Cytoplasmic	342	423	0.80
Transmembrane Helix	424	445	0.74
Non-Cytoplasmic	446	457	0.86