YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71905527, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPALQIISP FLDSRRSTSA FWHLDMKLGF SPVDLVSFAG PFLPFRPKPI CCFRTCKAFI  60
   61 LRSDFFNSML GPLIFLCRSP LINGHGHHLI EISPWRFWFF IYHLRILVLA ISRNVWPHSK 120
  121 VLKTFSLIFL NCTCLCVKCG FELWVFIAQW SPSSSSIAFK LITMSIIMFH CLIVYAAIDR 180
  181 RFVCLLCWIL KLTLTDYRTI VLRILAILFP WVLQLAPVRS IASMSLSTSL RPLTVTNLLS 240
  241 FDYFEDDPSI YCDLTCCTVL LCLCLKALME FKSMHFIFLF MVLGNTVCCN ALIFEFLNSI 300
  301 SCNCSMFH

Type	Start	End	Confidence
Cytoplasmic	1	63	0.72
Transmembrane Helix	64	82	0.82
Non-Cytoplasmic	83	96	0.77
Transmembrane Helix	97	116	0.89
Cytoplasmic	117	126	0.82
Transmembrane Helix	127	148	0.93
Non-Cytoplasmic	149	156	0.89
Transmembrane Helix	157	178	0.94
Cytoplasmic	179	198	0.92
Transmembrane Helix	199	218	0.91
Non-Cytoplasmic	219	248	0.91
Transmembrane Helix	249	269	0.80
Cytoplasmic	270	275	0.79
Transmembrane Helix	276	297	0.91
Non-Cytoplasmic	298	308	0.82